The simplest way to import proteomic data is the XML-Import function of JVirGel. Just click on the computer icon in the toolbar to open the XML-Import dialog:
Select an organism. If you want JVirGel to predict the Sec-dependent secretome or the membrane subproteome enable signal peptide prediction and respectively transmembrane helices prediction by checking the corresponding checkboxes.
To start the XML-import just click the Start button. Be sure, that your firewall allows JVirGel to connect the database.
Congratulations, you have just created your first virtual gel !
In order to import your own sequence files in FASTA format, click on the Open icon in the toolbar. After selecting your FASTA-file the FASTA-import dialog appears:
If you want JVirGel to predict the Sec-dependent secretome or the membrane subproteome enable signal peptide prediction and respectively transmembrane helices prediction by checking the corresponding checkboxes.
Congratulations, you have just created your first virtual gel !
In order to import your own sequence files in EMBL format, click on the Open icon at the toolbar. After selecting an EMBL file the EMBL-import dialog appears:
If you want JVirGel to predict the Sec-dependent secretome or the membrane subproteome enable signal peptide prediction and respectively transmembrane helices prediction by checking the corresponding checkboxes. Furthermore, JVirGel is able to predict Codon Adaptation Indices (CAI) if you check the appropriate checkbox.
Congratulations, you have just created your first virtual gel !